USGS NWHC - Laboratory Information Management System - US - Avian Pox and Poxviruses

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Dernière version Publié par United States Geological Survey le août 31, 2016 United States Geological Survey
Accueil:
http://www.wdhc.usgs.gov
Date de publication:
31 août 2016
Licence:
CC0 1.0

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Description

The LIMS (laboratory information management system) database is a computerized record of specimens - from serum samples to carcasses - sent to the National Wildlife Health Center (NWHC) for processing and diagnostic workup. Data include history and recordkeeping information (identifier numbers, species, sex, submitter information, etc); types of tests run (virology, bacteriology, parasitology, chemistry, etc.) and some test results for heavy metals, particularly lead; and diagnostic results. The diagnostic coding system is based on SNOMED terminology, with certain modifications and additions to fit Center needs. SNOMED, the Systematized Nomenclature of Medicine, is a structured nomenclature and classification of the terminology used in human and veterinary medicine. Terms are assigned in any or all of the following six categories for each diagnosis: topography - detailed anatomic term for the site of interest; morphology - information on the pathogenic change or process associated with the topography; etiology - cause or causal agent of the disease or dysfunction; disease - disease, disease entity or syndrome; link - qualifier to link one diagnosis to another. These data include occurrence records for Avian Pox and poxviruses for the entire US, by the USGS National Wildlife Health Center (NWHC).

Versions

Le tableau ci-dessous naffiche que les versions publiées de la ressource accessibles publiquement.

Comment citer

Les chercheurs doivent citer cette ressource comme suit:

Cleary, K.R. 1995. Diagnostic Database Coding Dictionary. National Wildlife Health Center, Madison, WI. 66 pp.

Droits

Les chercheurs doivent respecter la déclaration de droits suivante:

L’éditeur et détenteur des droits de cette ressource est United States Geological Survey. En vertu de la loi, léditeur a abandonné ses droits par rapport à ces données et les a dédié au Domaine Public (CC0 1.0). Les utilisateurs peuvent copier, modifier, distribuer et utiliser ces travaux, incluant des utilisations commerciales, sans aucune restriction.

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Mots-clé

Metadata; occurrence; observation; wildlife; epizootics; mortality; morbidity; disease; avian; mammal; endangered species; bird; wildlife health; amphibian; reptile; marine invertebrate; endangered species; virus; pathogen; vector; host; Metadata

Données externes

Les données de la ressource sont disponibles dans dautres formats

USGS WDHC Quarterly Mortality Reports http://www.nwhc.usgs.gov/publications/quarterly_reports/index.jsp UTF-8 Adobe pdf

Contacts

Karen Cunningham
  • Curateur Des Données ●
  • Créateur
  • Data Manager
National Wildlife Health Center
  • 6006 Schroeder Road
53711-6223 Madison
Wisconsin
US
  • +1-608-270-2423
Annie Simpson
  • Fournisseur Des Métadonnées
  • biologist and information scientist
USGS Core Science Analytics Synthesis and Libraries Program
  • 12201 Sunrise Valley Drive, Mailstop 302
20192 Reston
Virginia
US
  • +1 703-648-4281
Jennifer Buckner
  • Personne De Contact ●
  • Chercheur Principal
  • Diagnostic Database Manager
National Wildlife Health Center
  • 6006 Schroeder Road
53711-6223 Madison
Wisconsin
US
  • +1-608-270-2415
David Blehert
  • Personne De Contact
  • Branch Chief, Disease Investigations
National Wildlife Health Center
  • 6006 Schroeder Road
53711-6223 Madison
Wisconsin
US
  • +1-608-270-2460

Couverture géographique

US and Territories, including Midway Island and Puerto Rico.

Enveloppe géographique Sud Ouest [17,61, -178,93], Nord Est [71,48, -66,29]

Couverture taxonomique

Avian Pox and host organisms.

Class Aves (Birds)
Genus Avipox Virus (Avian Pox)

Couverture temporelle

Date de début / Date de fin 1980-01-01 / 2014-01-01

Données sur le projet

Pas de description disponible

Titre USGS - Wildlife Health Diagnostic Database, Laboratory Information Management System (LIMS), entire US, Avian Pox and Poxviruses
Financement Unites States Geological Survey Ecosystems Mission Area
Description du domaine détude / de recherche LIMS is a process-based record of samples sent to NWHC, and includes documentation on how samples and data move through the Center, as well as results information sent back to the submitter and other contacts. It may not be a representative sample of mortality for any particular species or group; however, the database can be used to determine if a disease/syndrome existed. For example, the database can be used to document avian cholera in mallards in California at a particular location or time, but it cannot be used to say that there was more cholera in 1990 than in 1980, since the number of specimens submitted for diagnostic workup does not necessarily reflect the total number of mortalities. Individuals interested in documenting total mortalities should reference the Epizootiological Database (EPIZOO), also maintained at NWHC.
Description du design The datafile was developed and is maintained by personnel at NWHC and is the result of years of diagnostic work by Center personnel. However, federal, state, tribal, and local agencies, universities and private individuals have all been involved as contributors to the system and their assistance should not be ignored.

Les personnes impliquées dans le projet:

Leanne White
  • Curateur Des Données

Méthodes déchantillonnage

A complete description of the data set is provided in the document referenced in 5.2.2 (Diagnostic Database Coding Dictionary), including field lengths, descriptions and attribute value indicators.

Etendue de létude Federal, state, tribal and local agencies, universities, private individuals and foreign governments have all been involved as contributors to the system; all have submitted samples and/or carcasses for diagnostic evaluation and have provided the history portion of the database.
Contrôle qualité Data are verified upon completion by case pathologist. Random subsets of records are verified for all fields on an intermittent basis. Values for selected fields are constrained and tested during data entry. When all work is complete, an assigned pathologist/clinician is responsible for reviewing the information, verifying its accuracy, determining a final diagnosis and issuing a final report. A summary of this information is then incorporated into the master file and becomes a part of the permanent record.

Description des étapes de la méthode:

  1. Various NWHC standard operating procedures are utilized during data processing - interested individuals should reference the NWHC SOP manual for specifics. Contact the PROCESS CONTACT listed below for additional information.

Citations bibliographiques

  1. USGS National Wildlife Health Center. Resources on Avian Pox and Poxviruses. Accessed 2015-07-20. http://www.nwhc.usgs.gov/disease_information/other_diseases/avian_pox.jsp

Métadonnées additionnelles