說明
The LIMS (laboratory information management system) database is a computerized record of specimens - from serum samples to carcasses - sent to the National Wildlife Health Center (NWHC) for processing and diagnostic workup. Data include history and recordkeeping information (identifier numbers, species, sex, submitter information, etc); types of tests run (virology, bacteriology, parasitology, chemistry, etc.) and some test results for heavy metals, particularly lead; and diagnostic results. The diagnostic coding system is based on SNOMED terminology, with certain modifications and additions to fit Center needs. SNOMED, the Systematized Nomenclature of Medicine, is a structured nomenclature and classification of the terminology used in human and veterinary medicine. Terms are assigned in any or all of the following six categories for each diagnosis: topography - detailed anatomic term for the site of interest; morphology - information on the pathogenic change or process associated with the topography; etiology - cause or causal agent of the disease or dysfunction; disease - disease, disease entity or syndrome; link - qualifier to link one diagnosis to another. These data include occurrence records for Avian Cholera and hosts for eastern US, by the USGS National Wildlife Health Center (NWHC).
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Cleary, K.R. 1995. Diagnostic Database Coding Dictionary. National Wildlife Health Center, Madison, WI. 66 pp.
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 United States Geological Survey。 To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF 註冊
此資源尚未向GBIF註冊
關鍵字
Metadata; occurrence; observation; wildlife; epizootics; mortality; morbidity; disease; avian; mammal; endangered species; bird; wildlife health; amphibian; reptile; marine invertebrate; endangered species; virus; pathogen; vector; host; Metadata
外部資料
此資源尚有其他格式可用
| USGS WDHC Quarterly Mortality Reports | http://www.nwhc.usgs.gov/publications/quarterly_reports/index.jsp UTF-8 Adobe pdf |
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聯絡資訊
- 託管人 ●
- 出處
- Data Manager
- 6006 Schroeder Road
- +1-608-270-2423
- 元數據提供者
- Biologist and information scientist
- 12201 Sunrise Valley Drive, Mailstop 302
- +1 703-648-4281
- 連絡人 ●
- 研究主持人
- Diagnostic Database Manager
- 6006 Schroeder Road
- +1-608-270-2415
- 連絡人
- Branch Chief, Disease Investigations
- 6006 Schroeder Road
- +1-608-270-2460
地理涵蓋範圍
Eastern United States.
| 界定座標範圍 | 緯度南界 經度西界 [24.72, -93.67], 緯度北界 經度東界 [49.02, -66.64] |
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分類群涵蓋範圍
Pasteurella multocida (Avian Cholera) and its host organisms (birds).
| Class | Aves (birds) |
|---|---|
| Species | Pasteurella multocida (Avian Cholera) |
時間涵蓋範圍
| 起始日期 / 結束日期 | 1975-01-01 / 2014-01-01 |
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計畫資料
無相關描述
| 計畫名稱 | USGS - Wildlife Health Diagnostic Database, Laboratory Information Management System (LIMS), Eastern US, Avian Cholera and Pasteurella multocida |
|---|---|
| 經費來源 | Unites States Geological Survey Ecosystems Mission Area |
| 研究區域描述 | LIMS is a process-based record of samples sent to NWHC, and includes documentation on how samples and data move through the Center, as well as results information sent back to the submitter and other contacts. It may not be a representative sample of mortality for any particular species or group; however, the database can be used to determine if a disease/syndrome existed. For example, the database can be used to document avian cholera in mallards in California at a particular location or time, but it cannot be used to say that there was more cholera in 1990 than in 1980, since the number of specimens submitted for diagnostic workup does not necessarily reflect the total number of mortalities. Individuals interested in documenting total mortalities should reference the Epizootiological Database (EPIZOO), also maintained at NWHC. |
| 研究設計描述 | The datafile was developed and is maintained by personnel at NWHC and is the result of years of diagnostic work by Center personnel. However, federal, state, tribal, and local agencies, universities and private individuals have all been involved as contributors to the system and their assistance should not be ignored. |
參與計畫的人員:
- 託管人
取樣方法
A complete description of the data set is provided in the document referenced in 5.2.2 (Diagnostic Database Coding Dictionary), including field lengths, descriptions and attribute value indicators.
| 研究範圍 | Federal, state, tribal and local agencies, universities, private individuals and foreign governments have all been involved as contributors to the system; all have submitted samples and/or carcasses for diagnostic evaluation and have provided the history portion of the database. |
|---|---|
| 品質控管 | Data are verified upon completion by case pathologist. Random subsets of records are verified for all fields on an intermittent basis. Values for selected fields are constrained and tested during data entry. When all work is complete, an assigned pathologist/clinician is responsible for reviewing the information, verifying its accuracy, determining a final diagnosis and issuing a final report. A summary of this information is then incorporated into the master file and becomes a part of the permanent record. |
方法步驟描述:
- Various NWHC standard operating procedures are utilized during data processing - interested individuals should reference the NWHC SOP manual for specifics. Contact the PROCESS CONTACT listed below for additional information.
引用文獻
- USGS National Wildlife Health Center. Information on Avian Cholera, Pasteurella multocida. Accessed 2015-07-20. http://www.nwhc.usgs.gov/disease_information/avian_cholera/